Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015859073.1_cds_XP_016514190.1_26664
CDS Infomation

[gene=LOC107830988] [db_xref=GeneID:107830988] [protein=AUGMIN subunit 5-like] [protein_id=XP_016514190.1] [location=complement(join(3322..3525,5724..5933,6585..6761,7124..7265,8053..8592,9326..9819))] [gbkey=CDS]
Sequence

ATGGCAGGGCCCGTACAACCAGAAGCTATACTGGAATGGCTTCAGAAGGAGATGGGGTAC
CAACCTTTAGGTTCATACGCAGCTTCAAGCAAAGCAGCAATGCCCACTATCGATTCGCTT
CGCAAGATTTGCCGTGGGAACATGTTACCGATTTGGAATTTCCTCTTGAACAGAGTGAAA
TCCGAGAAAACTGTTGAAAAAATCCGCCGCAATATCCTCGTGCACGGAAAAGATGATGAA
AATGTTAATGCTGTTGATTCAGGGAGGAGTAAAGGGAAGAAGAAGGAGAAGGTAGGGGGA
GTGGGTAGGGACAATGGTTCGGGTGAGAATAGTAGAGAATTTGCATTGCAGGAGAGAGAC
TTGGCGGAGAAAGAGGTGGAAAGGCTAGGGCAGATAGTGAGGCGTCAGAGGAAAGAGTTG
AAGGCAAGGATGTTGGAGGTCTCGAGGGAGGAGGCTGAGCGTAAGCGCATGCTTGACGAG
AGGTCTAACTATAGACATAAACAAGTAATGCTGGAGGCTTATGATCAACAGTGTGATGAA
GCTGCAAAAATATTTTCGGAGTACCATAAACGTCTAAGTTATTATGTTAGCCAAGCAAGG
AATGTTAAGCGGTCTAGTGTTGATTCTTCTGCGGAGGTGGTTACTACTTTTCATGCAAAT
GAGAAAGAATCTGTTTATTCAACTTTTAAAGGAGCCAAAAGTGCAGAGGATGTCATTCTT
ATTGAAACAACATGGGAAAGAAATATCAGGAAGGCATGTGAGTCTCTTGCTATGCAGATG
GCTGAAAAGATTCACAACTCTTTTCCTGCTTATGAAGGAAATGGAATCCATATGAATTCT
CTGTTACAAGCTGCCAAGTTAGGTATTGACCTTGATGGTGATTTGCCCGATGAAGTAAGA
GATGCAATTGTAAGTTGCCTGAAAAGTCCTCCTCAGTTGCTACAGGCAATCACTGCATAT
GCTCAAAATCTGAAGACTTCGATTACTCGAGAAATAGAGAAAGTTGATGTTAGAGCTGAT
GCAGAGATTCTAAGGTACAAGTACGAGAATGATAGAGTAATGGATGCTTCTTCTCCTGAT
GTAACATCACCTTTACAATATCAGCTTTATGGCAATGGCAAAATTGGAGGTGATACATCT
TCAAGAGGGACTCAAAATCAACTTCTTGAGAGACAGAAAGCACATGTTCAGCAATTCATG
GCTACCGAAGATGCATTGAATAAAGCCGCAGAAGCAAGAAATATGAGTCAACAGCTTTTA
AAGCGTCTGCAAGGAACTGGTGATGCAATCTCTTCACACTCACTAGTAATTGGCGGAACA
TCAAAGAGTATGAGCAGCCTCAGACAACTTGAGCTGGAGGTCTGGACAAAGGAAAGAGAA
GCAGCTGGATTAAGAGCTAGCGTGAACACTCTAATGTCTGAAATACAACGTTTAAATACA
TTGTGTGCGGAGAGAAAAGAAGCGGAAGATTCTTTGAGAAAGAAATGGAAGAAGATCGAA
GAATTTGATGCTCGGAGATCAGAGCTTGAATCAATTTATAGTGCCCTACTGAAGGCAAGC
ATGGATGCTGCAGCATTTTGGAGTCAGCAGCCATCAGCTGCAAGGGAGTATTCATCAAGT
TCTATAATTCCTGCTTGCACTGTGCTTGTAGATTTATCAAACAGTGCAAAAGATCTTATT
GAGCAAGAAGTTTCAGCATTTTATCAAACTCCTGATAATACACTTTACATGCTTCCATCA
ACACCCCAGGTTTGTAGATTTCACTAA

Peptide Sequence

PEP ID

XP_016514190.1
PEP Infomation

PREDICTED: AUGMIN subunit 5-like [Nicotiana tabacum]
Sequence

MAGPVQPEAILEWLQKEMGYQPLGSYAASSKAAMPTIDSLRKICRGNMLPIWNFLLNRVK
SEKTVEKIRRNILVHGKDDENVNAVDSGRSKGKKKEKVGGVGRDNGSGENSREFALQERD
LAEKEVERLGQIVRRQRKELKARMLEVSREEAERKRMLDERSNYRHKQVMLEAYDQQCDE
AAKIFSEYHKRLSYYVSQARNVKRSSVDSSAEVVTTFHANEKESVYSTFKGAKSAEDVIL
IETTWERNIRKACESLAMQMAEKIHNSFPAYEGNGIHMNSLLQAAKLGIDLDGDLPDEVR
DAIVSCLKSPPQLLQAITAYAQNLKTSITREIEKVDVRADAEILRYKYENDRVMDASSPD
VTSPLQYQLYGNGKIGGDTSSRGTQNQLLERQKAHVQQFMATEDALNKAAEARNMSQQLL
KRLQGTGDAISSHSLVIGGTSKSMSSLRQLELEVWTKEREAAGLRASVNTLMSEIQRLNT
LCAERKEAEDSLRKKWKKIEEFDARRSELESIYSALLKASMDAAAFWSQQPSAAREYSSS
SIIPACTVLVDLSNSAKDLIEQEVSAFYQTPDNTLYMLPSTPQVCRFH

Transcript Sequence

Gene sequence data has not been registered.